zoltan57andCopilot App 012dc15042 V4.6 Phase 8: one-time V4.5 -> V4.6 data migration script (review 1a)
Adds tools/migrate_v45_to_v46.py, the final V4.6 deliverable.

Diffing the backup against the current SQLModel metadata showed that the
re-level changed no columns: both have the same 10 tables with identical
column sets. What changed is index coverage [HIGH-04], the use_alter break in
the source/execution_attempt foreign key cycle, and the relationship loading
strategy [CRIT-02]. The migration is therefore a faithful, foreign-key-ordered
row copy rather than a transformation.

Design:

- The backup is read with plain sqlite3 rather than through the ORM. The plan
  anticipated ORM reads carrying explicit eager loads under lazy="raise";
  raw reads are strictly safer, because the V4.5 file is not guaranteed to
  satisfy the V4.6 mappers and no relationship is ever traversed.
- Writes go through SQLAlchemy Core against the live metadata, so the script
  works unchanged against PostgreSQL when that cutover happens.
- source rows are inserted with preferred_execution_attempt_id cleared and the
  selections are replayed after execution_attempt is populated, matching the
  use_alter break in the cycle.
- _coerce() converts raw SQLite values into what each column binds. It accepts
  both enum spellings, because job_source.status declares values_callable and
  stores lowercase values while execution_attempt.status does not and stores
  uppercase names, despite both using JobSourceStatus.
- Idempotent: a row whose primary key already exists is skipped, never
  updated. Never invoked from application startup and never run by the test
  suite.
- A pre-flight guard aborts if the backup row counts do not match the recorded
  V4.5 snapshot, so the script cannot silently run against the wrong file.

Verification against a throwaway target:

- 282 rows copied; per-table counts match the plan exactly (document 8,
  document_person 11, document_type 7, execution_attempt 80, job 11,
  job_source 79, person 5, person_role 3, processing_artifact 2, source 76).
- Every table is cell-for-cell identical to the backup across all columns.
- A second run inserts 0 rows and skips all 282.
- Artifact integrity passes for every migrated artifact, checked through the
  application's own SourceService verifier.
- 9 indexes added, 0 lost. No on-disk Source, portrait, or artifact file is
  written by the script.

The live data/transcription.db is deliberately left untouched; it currently
holds only bootstrap seed rows whose UUIDs differ from the backup.

Co-authored-by: Copilot App <[email protected]>
2026-08-17 20:02:34 -05:00
2026-08-10 12:34:36 -05:00
2026-08-17 15:25:52 -05:00
2026-06-26 19:17:18 -05:00
2026-06-22 17:32:18 -05:00
2026-06-26 19:17:18 -05:00
2026-06-26 19:17:33 -05:00

Transcription

Historical document transcription system for family-history documents.

The app lets you upload a document image/PDF, queues a background transcription job, and then shows job status and results in a web UI.

What the app does

  • Upload document files (.jpg, .jpeg, .png, .tif, .tiff, .pdf)
  • Persist document + job records in SQLite
  • Process jobs in a background worker (queued -> processing -> transcribed/failed)
  • Store transcript text (or failure detail)
  • Show status and results in the NiceGUI interface

Quick start

1) Install dependencies

uv sync

2) Configure environment

Create a .env file in the project root with the required OpenRouter API key:

OPENROUTER_API_KEY=your_openrouter_api_key

Settings are read from CLI arguments first, then environment variables, then .env, then the defaults below.

Configuration Source Precedence

When the same setting is provided in multiple places, the value is chosen in this order (highest priority first):

  1. CLI arguments (for example --port 8000)
  2. Settings constructor arguments (used mainly in tests)
  3. Environment variables
  4. .env file values
  5. Model defaults in code

Practical examples:

  • --port 8000 overrides both PORT=8000 in the shell and PORT=7000 in .env.
  • DATABASE__PATH=prod.db in the shell overrides DATABASE__PATH=dev.db in .env.

Server and runtime

Environment variable Default Description
HOST 0.0.0.0 Address on which the server listens.
PORT 8000 Server port.
LOG_LEVEL info Uvicorn and application log level.
RELOAD false Restart the development server when source files change.
ENVIRONMENT development Runtime environment: development, test, or production.

Provider

Environment variable Default Description
PROVIDER openrouter Transcription provider.
OPENROUTER_API_KEY Required OpenRouter API key.
PROVIDER_MODEL Provider default Optional model override.
OPENROUTER_HTTP_REFERER Unset Optional OpenRouter attribution URL.
OPENROUTER_APP_TITLE Unset Optional OpenRouter attribution title.

Database and files

Use nested env vars for database settings (recommended):

DATABASE__DRIVER=sqlite
DATABASE__PATH=app.db
# BOOTSTRAP_SCHEMA_ON_STARTUP=true
SQLITE_CHECK_SAME_THREAD=false
UPLOAD_DIR=./uploads
PROMPT_DIR=./prompts
DEFAULT_PROMPT_NAME=transcribe_document.md
# TRANSCRIPTION_TEMPERATURE=0.2  # range: 0.0-2.0
# TRANSCRIPTION_TOP_P=0.9       # range: 0.0-1.0

For PostgreSQL:

DATABASE__DRIVER=postgres
DATABASE__HOST=localhost
DATABASE__PORT=5432
DATABASE__DATABASE=transcription
DATABASE__USER=postgres
DATABASE__PASSWORD=change-me

This uses Pydantic nested settings (env_nested_delimiter='__') and avoids JSON blobs in .env. A top-level DATABASE={...} JSON value is still supported as a fallback, and nested keys such as DATABASE__PATH take precedence over conflicting JSON keys.

BOOTSTRAP_SCHEMA_ON_STARTUP creates missing tables when the app starts. When unset, it is enabled in development and test, and disabled in production; set it explicitly to override that policy. SQLITE_CHECK_SAME_THREAD defaults to false.

Worker

WORKER_MAX_RETRIES=0
WORKER_RETRY_BACKOFF_SECONDS=0
WORKER_PROVIDER_TIMEOUT_SECONDS=20
WORKER_MIN_TRANSCRIPTION_CHARS=0
WORKER_MIN_TRANSCRIPTION_LINES=0
WORKER_FAIL_ON_FINISH_REASON_LENGTH=false

3) Run the app

uv run python -m transcription --port 8000 --reload --database.driver sqlite --bootstrap-schema-on-startup

This starts the development server with SQLite, creates missing tables, and enables automatic reload. Run uv run python -m transcription --help for all CLI options; CLI names use kebab case and nested database options use dot notation, such as --database.path ./data/transcription.db.

4) Open in browser

Replace localhost with the server's hostname or IP address when connecting from another machine.

How to navigate the GUI

  • Upload page (/ui)

    • Select a supported file to upload.
    • The app creates a queued transcription job.
    • Use the View jobs link to inspect progress.
  • Jobs page (/ui/jobs)

    • See all jobs and their status.
    • Use Refresh to reload current states.
    • Open a specific job to see details.
  • Job detail page (/ui/jobs/{job_id})

    • Shows job metadata and status.
    • Displays transcript text when successful.
    • Displays failure detail when transcription fails.

Prompt artifacts

Prompt files are stored directly in PROMPT_DIR (default: ./prompts). DEFAULT_PROMPT_NAME must be a filename, not a path. Each job snapshots the validated prompt text, SHA-256 hash, and sampling values for reproducibility.

The canonical MVP prompt is:

  • prompts/transcribe_document.md

Destructive test procedure (with data backup)

AI execution policy: before the first unit-test run in a test/fix cycle, create one backup of ./data. Reuse that same backup for every subsequent test run in the cycle. After tests succeed, always pause and ask whether to restore now.

Use the cross-platform Python wrapper below whenever an AI agent runs tests against this repository.

  1. Create one backup of ./data and mark it as the active test-cycle backup.
  2. Run your test command.
  3. On failure, fix the errors and run the wrapper again; it reuses the active backup and never backs up post-test data.
  4. On success, always prompt whether to restore now (do not auto-restore unless explicitly approved).
  5. Close the cycle only by restoring the active backup or explicitly accepting the current data.

Preflight behavior:

  • Backup preflight is warning-only when data/transcription.db appears in use.
  • Restore preflight is blocking: the script prompts you to close conflicting applications, then type retry to re-check or cancel to skip restore.

Run with confirmation-gated restore (default)

uv run python tools/run_destructive_tests.py -- pytest tests/services/test_job_service.py tests/ui/test_jobs_page.py

After tests pass, the script asks whether to restore backup immediately.

This is the required default mode for AI-assisted test runs because it gives time to verify and accept code changes before any restoration happens.

Run with automatic restore (non-interactive)

uv run python tools/run_destructive_tests.py --auto-restore -- pytest

Run without terminal prompt (decide restore later)

uv run python tools/run_destructive_tests.py --skip-restore-prompt -- pytest

This keeps both the current post-test state and the backup, so restore can be decided explicitly later.

Repeated wrapper invocations reuse the backup recorded in .test-backups/.active-backup. If that backup is missing, the wrapper stops rather than creating a replacement from potentially destructive post-test data.

Restore later from a saved backup

uv run python tools/run_destructive_tests.py --restore-from data-backup-YYYYMMDD-HHMMSS

To keep the current data and close the active cycle without restoring:

uv run python tools/run_destructive_tests.py --accept-current-data

Backups are stored in .test-backups/ and ignored by git.

S
Description
A project to transcribe several thousand pages of family history documents
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