initial server
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For a modern Python project in 2026, I would treat the MCP server exactly like any other deployable service:
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* `src/` layout
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* `uv` for dependency management
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* skill modules as importable Python packages
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* FastMCP composition via `mount()`
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* Docker image built from the root package
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* resources/prompts kept close to the skill that owns them
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* avoid giant decorator files with hundreds of tools
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FastMCP's mounting/composition model is specifically intended for this sort of modular organization. ([FastMCP][1])
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I'd structure it something like:
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```text
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personal-mcp/
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│
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├── pyproject.toml
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├── uv.lock
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├── README.md
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│
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├── Dockerfile
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├── .dockerignore
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│
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├── src/
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│ └── personal_mcp/
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│
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│ ├── __init__.py
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│ │
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│ ├── main.py
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│ │ # Creates the root MCP server
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│ │ # Mounts all skills
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│ │
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│ ├── settings.py
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│ │ # Pydantic settings
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│ │
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│ ├── graph/
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│ │ ├── __init__.py
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│ │ └── capability_graph.py
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│ │
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│ ├── catalog/
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│ │ ├── __init__.py
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│ │ ├── resources.py
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│ │ └── tools.py
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│ │
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│ └── skills/
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│
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│ ├── __init__.py
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│ │
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│ ├── nixos/
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│ │
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│ │ ├── __init__.py
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│ │ ├── server.py
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│ │ │
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│ │ ├── tools/
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│ │ │ └── rebuild.py
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│ │ │
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│ │ ├── prompts/
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│ │ │ └── expert.py
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│ │ │
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│ │ ├── resources/
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│ │ │ ├── overview.py
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│ │ │ └── troubleshooting.py
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│ │ │
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│ │ └── metadata.yaml
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│ │
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│ ├── homelab/
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│ │
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│ │ ├── __init__.py
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│ │ ├── server.py
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│ │ ├── tools/
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│ │ ├── prompts/
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│ │ ├── resources/
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│ │ └── metadata.yaml
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│ │
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│ └── knowledge_base/
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│ ├── __init__.py
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│ ├── server.py
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│ ├── tools/
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│ ├── prompts/
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│ ├── resources/
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│ └── metadata.yaml
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│
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└── tests/
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├── test_catalog.py
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├── test_nixos.py
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└── test_homelab.py
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```
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---
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## main.py
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This is intentionally boring.
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```python
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from fastmcp import FastMCP
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from personal_mcp.catalog.server import catalog_server
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from personal_mcp.skills.nixos.server import nixos_server
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from personal_mcp.skills.homelab.server import homelab_server
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mcp = FastMCP("Personal MCP")
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mcp.mount(catalog_server, namespace="catalog")
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mcp.mount(nixos_server, namespace="nixos")
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mcp.mount(homelab_server, namespace="homelab")
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if __name__ == "__main__":
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mcp.run()
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```
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FastMCP namespaces resources, prompts, and tools automatically when mounted. ([FastMCP][2])
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---
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## Skill Metadata
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Every skill gets metadata.
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```yaml
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# skills/nixos/metadata.yaml
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id: nixos
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name: NixOS Administration
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description: |
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Tools and guidance for managing NixOS systems.
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tags:
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- nix
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- linux
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- systemd
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capabilities:
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- package_management
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- service_debugging
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- flakes
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depends_on:
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- certificates
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```
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The catalog layer reads these files.
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---
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## Skill Server
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Each skill owns its own MCP instance.
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```python
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# skills/nixos/server.py
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from fastmcp import FastMCP
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nixos_server = FastMCP(
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"NixOS"
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)
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from .tools.rebuild import *
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from .resources.overview import *
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from .prompts.expert import *
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```
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The pattern is:
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```text
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One skill
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=
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One FastMCP server
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```
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This keeps ownership obvious.
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---
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## Skill Resource
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Resources are your discovery layer.
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```python
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# resources/overview.py
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from .server import nixos_server
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@nixos_server.resource(
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"resource://skills/nixos"
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)
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def nixos_skill_description():
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return """
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NixOS administration skill.
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Provides:
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- flake troubleshooting
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- package search
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- service diagnostics
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- generation management
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"""
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```
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Resources are exactly what MCP intends for exposing contextual information and data to clients. ([fastmcp.mintlify.app][3])
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---
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## Skill Prompt
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```python
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# prompts/expert.py
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from .server import nixos_server
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@nixos_server.prompt
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def nixos_expert():
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return """
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Act as an expert NixOS administrator.
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Prefer:
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- flakes
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- declarative configuration
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- modern systemd patterns
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Avoid:
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- imperative package management
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"""
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```
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---
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## Skill Tool
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```python
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# tools/rebuild.py
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from .server import nixos_server
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@nixos_server.tool
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def explain_rebuild():
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"""
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Explain a nixos-rebuild failure.
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"""
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return {
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"workflow": [
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"Inspect journal",
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"Check evaluation errors",
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"Verify inputs",
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"Retry build"
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]
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}
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```
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---
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## Catalog Layer
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The catalog should be its own server.
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Not a skill.
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Its job is discovery.
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```python
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catalog/
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├── server.py
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├── tools.py
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└── resources.py
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```
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Example:
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```python
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# catalog/tools.py
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@catalog_server.tool
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def list_skills():
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return [
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"nixos",
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"homelab",
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"knowledge_base"
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]
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```
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```python
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@catalog_server.tool
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def describe_skill(
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name: str
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):
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...
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```
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---
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## Capability Graph
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This is where NetworkX belongs.
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```python
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# graph/capability_graph.py
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import networkx as nx
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graph = nx.DiGraph()
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graph.add_edge(
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"homelab",
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"certificates",
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relation="depends_on"
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)
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graph.add_edge(
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"nixos",
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"homelab",
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relation="manages"
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)
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```
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Expose it as:
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```python
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resource://skills/graph
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resource://skills/nixos/dependencies
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```
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Now agents can discover related capabilities without hardcoding them.
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---
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## pyproject.toml
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Minimal UV setup:
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```toml
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[project]
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name = "personal-mcp"
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version = "0.1.0"
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dependencies = [
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"fastmcp",
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"networkx",
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"pydantic-settings",
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"pyyaml",
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]
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[project.scripts]
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personal-mcp = "personal_mcp.main:mcp"
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```
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---
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## Docker
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```dockerfile
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FROM python:3.13-slim
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WORKDIR /app
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COPY pyproject.toml uv.lock ./
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RUN pip install uv
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RUN uv sync --frozen
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COPY src ./src
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CMD ["uv", "run", "python", "-m", "personal_mcp.main"]
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```
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---
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If I were building this for long-term growth, I'd make one additional change: treat every skill as a Python package with a common interface:
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```python
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class Skill:
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id: str
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metadata: SkillMetadata
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def create_server(self) -> FastMCP:
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...
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```
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Then `main.py` simply discovers skills dynamically:
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```python
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for skill in discover_skills():
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mcp.mount(
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skill.create_server(),
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namespace=skill.id,
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)
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```
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At that point adding a new skill becomes:
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```text
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mkdir skills/new_skill
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drop in metadata.yaml
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implement Skill
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```
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and the server automatically exposes it. That's the closest thing to a plugin architecture while still remaining very Pythonic and Docker-friendly.
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[1]: https://fastmcp.wiki/en/servers/composition?utm_source=chatgpt.com "Server Composition - FastMCP"
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[2]: https://gofastmcp.com/servers/composition?utm_source=chatgpt.com "Composing Servers - FastMCP"
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[3]: https://fastmcp.mintlify.app/servers/resources?utm_source=chatgpt.com "Resources & Templates - FastMCP"
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