doc updates for new structure

.github/copilot-instructions.md

@@ -2,7 +2,7 @@
 
 This repository is resource-first.
 
-- Canonical skill guidance lives in `docs/skills/<skill-id>/SKILL.md`.
+- Canonical skill guidance lives in `src/personal_mcp/docs/skills/<skill-id>/SKILL.md`.
 - Skills are exposed through FastMCP's native `skill://` resource family.
 - Prompts are exposed through native MCP prompt operations (`prompts/list`, `prompts/get`).
 - General documentation pages are exposed through `resource://docs/{path*}`.

.github/instructions/authoring.instructions.md

@@ -1,19 +1,19 @@
 ---
 name: Authoring Content
-description: "Use when editing Markdown under docs/. Routes authors to the canonical docs ownership, layout, and symlink guidance."
-applyTo: 'docs/**/*.md'
+description: "Use when editing Markdown under src/personal_mcp/docs/. Routes authors to the canonical docs ownership and layout guidance."
+applyTo: 'src/personal_mcp/docs/**/*.md'
 ---
 
-For edits under `docs/`, use the [Authoring Guide](../../docs/authoring.md) as the entry point for content placement and contracts.
+For edits under `src/personal_mcp/docs/`, use the [Authoring Guide](../../src/personal_mcp/docs/authoring.md) as the entry point for content placement and contracts.
 
-For source-tree ownership, symlink, packaging, or runtime questions, follow [Source Tree Ownership](../../docs/authoring.md). Treat that section as authoritative instead of restating its guidance here.
+For source-tree ownership, packaging, or runtime questions, follow [Source Tree Ownership](../../src/personal_mcp/docs/authoring.md). Treat that section as authoritative instead of restating its guidance here.
 
 
 Primary references:
-- [Skill contract](../../docs/contracts/skill_contract.md)
-- [Prompt contract](../../docs/contracts/prompt.md)
-- [Frontmatter contract](../../docs/contracts/frontmatter.md)
-- [URI contract](../../docs/contracts/uris.md)
+- [Skill contract](../../src/personal_mcp/docs/contracts/skill_contract.md)
+- [Prompt contract](../../src/personal_mcp/docs/contracts/prompt.md)
+- [Frontmatter contract](../../src/personal_mcp/docs/contracts/frontmatter.md)
+- [URI contract](../../src/personal_mcp/docs/contracts/uris.md)
 - `skill://zensical-docs/SKILL.md`
 
 Inspect `skill://zensical-docs/_manifest` only when a supporting documentation reference is needed.

.github/instructions/pytesting.instructions.md

@@ -21,4 +21,4 @@ Execution pattern:
 
 If task intent is ambiguous, ask one clarifying question before editing.
 
-Be sure to also refer to the [testing page](../../docs/testing.md) page for design detail
+Be sure to also refer to the [testing page](../../src/personal_mcp/docs/testing.md) for design detail.

.github/prompts/pytest-fill-scaffold.prompt.md

@@ -26,11 +26,11 @@ Use this prompt after test scaffolding exists and method names/docstrings are al
 
 Load these in order and use only what matches the task:
 
-1. Core defaults: [pytest scaffolding skill](../../docs/skills/pytesting/SKILL.md)
-2. Naming/hierarchy preservation: [naming and organization](../../docs/skills/pytesting/references/naming-and-organization.md)
-3. Baseline pytest fixtures/markers: [pytest docs notes](../../docs/skills/pytesting/references/pytest-docs.md)
-4. FastAPI-specific behavior (only when needed): [fastapi testing](../../docs/skills/pytesting/references/fastapi-testing.md)
-5. SQLAlchemy-specific behavior (only when needed): [sqlalchemy testing](../../docs/skills/pytesting/references/sqlalchemy-testing.md)
+1. Core defaults: [pytest scaffolding skill](../../src/personal_mcp/docs/skills/pytesting/SKILL.md)
+2. Naming/hierarchy preservation: [naming and organization](../../src/personal_mcp/docs/skills/pytesting/references/naming-and-organization.md)
+3. Baseline pytest fixtures/markers: [pytest docs notes](../../src/personal_mcp/docs/skills/pytesting/references/pytest-docs.md)
+4. FastAPI-specific behavior (only when needed): [fastapi testing](../../src/personal_mcp/docs/skills/pytesting/references/fastapi-testing.md)
+5. SQLAlchemy-specific behavior (only when needed): [sqlalchemy testing](../../src/personal_mcp/docs/skills/pytesting/references/sqlalchemy-testing.md)
 
 ## Workflow
 

.github/prompts/pytest-scaffold.prompt.md

@@ -24,8 +24,8 @@ Use this prompt to do in one run what we have been doing manually in chat:
 
 ## Repository Rules To Apply
 
-- Use [pytest scaffolding skill](../../docs/skills/pytesting/SKILL.md) for strategy and defaults.
-- Use [naming and organization reference](../../docs/skills/pytesting/references/naming-and-organization.md) before finalizing hierarchy.
+- Use [pytest scaffolding skill](../../src/personal_mcp/docs/skills/pytesting/SKILL.md) for strategy and defaults.
+- Use [naming and organization reference](../../src/personal_mcp/docs/skills/pytesting/references/naming-and-organization.md) before finalizing hierarchy.
 - Use `uv run pytest --collect-only -q` as structural validation.
 - Default to a source-mirror style adapted to this repository:
   - map selected modules to `tests/` with concise path segments when requested